Software Releases:The computational tools we have developed are available for download and free use by the academic community.

• GenomeSurveyor     (Prediction of motif targets in D. melanogaster)
  
  
• CRM discovery benchmark     (Data sets from D. melanogaster.)
  
  
• Morph software   (Probabilistic alignment of cis-regulatory modules)
  
  
• D2Z software   (Alignment free comparison of regulatory sequences.)
  
  
• Indelign software   (Probabilistically annotating indels in multiple alignments)
  
  
• DIPS software   (For finding discriminative PWM motifs)
  
  
• Stubb software   Stubb Web Server    (For finding cis-regulatory modules)
  
  
• YMF software   YMF Web Server   (Motif finding)
  
  
• PhyME software   (Motif finding in orthologous sequences)